anitram said:
Why do IgG3 and IgG2a get digested faster by pepsin than IgG1?
Yay! A question I care about.
Sorry Melon, but the geeky biochemist that I am must at least ponder this question.
Truthfully, I don't know the absolute answer. But here's what I do know (and this is from my memory of enzymatic digestions, how pepsin works and the overall antibody structure).
Every antibody has 2 identical heavy chains and 2 identical light chains. Here is the very simplified structure (ignore the dots... they are just used for alignment):
[size=0.5]...[/size]||
// \\
Pepsin digests at the "hinge" region (between the || area and the slanted // \\ areas). It also digests the || (also called the Fc region).
IgG3, IgG2a and IgG1 are just subclasses of the antibody class IgG. All of these subsclasses have small differences in the amino acid sequences in the constant region of the heavy chains. Therefore, it is my guess that the rate of digestion is heavily dependent on these amino acid differences. Pepsin is a "promiscuous" protein, in that it cleaves other proteins somewhat non-specifically. However, it does prefer phenylalanine and glutamate. As such, it is possible that IgG3 and IgG2a have more of those amino acids in the constant region of the Fc portion of the heavy chain.
Of course, I thought that your comment is only true with regards to mouse antibodies. I do not think this is true with regards to human antibodies.
O.K., geek mode off.
Not sure if I'm right or not, but this is the best I can do on a Sat. night at 1:10 a.m. - while I have friends e-mailing me telling me to come over to their house for some very late night drinks. LOL!